ViewWiki

Lesson 1 of 4

The double helix.

About 20 minutes · 5 practice questions

How DNA is built: two strands, four bases and one pairing rule, the hydrogen bonds that hold the ladder together, Chargaff's rule, and how one molecule becomes two.

Step 1 of 5 · Two strands and a ladder

Step 1 of 5

Two strands and a ladder

Every cell in your body holds a copy of the instructions for building the whole body, and they are written in DNA. A DNA molecule is two long strands twisted round each other into a double helix, like a rope ladder someone has twisted. The sides of the ladder are a backbone of sugar and phosphate, and the rungs are pairs of bases.

There are four bases: adenine (A), thymine (T), guanine (G) and cytosine (C). The instructions are written in their order along a strand, like words in an alphabet of four letters. Each rung holds one base from each strand, and the pairing rule decides the pair.

Turn the Scene and look at the rungs. Set Highlight to A–T and then to G–C, and check what sits opposite what.

To the question

Step 2 of 5

Hydrogen bonds

The two strands are not tied together by strong bonds. Each base pair is held by hydrogen bonds, weak attractions between atoms, drawn in the Scene as short lines across the gap. An A–T pair is held by two bonds, and a G–C pair by three.

One hydrogen bond is very weak, but along a strand of millions of pairs they add up to a firm hold. And because each one is weak, the helix can be opened like a zip without breaking the strands themselves.

G–C pairs is fixed now, and the G–C pairs are highlighted. Count the bonds.

To the question

Step 3 of 5

Chargaff’s rule

In 19501950⁠, before anyone knew how DNA is built, Erwin Chargaff measured the amounts of the bases in the DNA of different living things. For every one of them he found the same thing: exactly as much A as T, and exactly as much G as C. The balance of A–T against G–C changes from one living thing to the next, but the equalities do not.

The double helix explains this at once: every A sits opposite a T, so they come in pairs. From that, all four bases can be worked out from one number.

To the question

Step 4 of 5

A sturdier helix

Change G–C pairs and watch the number of bond lines change. GC-rich DNA is held by more bonds, so it takes more heat to open it. Lab tests such as PCR heat DNA until the strands come apart, and GC-rich DNA needs a higher temperature for that.

To the question

Step 5 of 5

One molecule becomes two

Before a cell divides it must copy its DNA, so that each daughter cell gets a whole copy. The pairing rule is what makes this possible: each strand holds enough information to build the other. Watson and Crick wrote about it in 19531953⁠, in a sentence that became famous, saying it had “not escaped our notice” that the pairing rule suggests a way of copying.

Look inside is fixed at Double helix now. Once you choose an answer, the Scene will open the helix and copy it.

To the question

Interactive scene

Loading the interactive version…

Each step sets up the Scene for you, and a control marked “fixed” stays put for that step.

To the experiment

Practice · Choose

Each rung of the ladder is a pair of bases, one from each strand. Which base always sits opposite G?

To the experiment

Practice · Calculate

The helix in the Scene has 2020⁠ base pairs, and 88⁠ of them, the highlighted ones, are G–C pairs. The rest are A–T. How many hydrogen bonds hold the two strands together?

To the experiment

Practice · Calculate

Now only 44⁠ of the 2020⁠ pairs are G–C, that is 20%20\%⁠ of the pairs. What percentage of all the bases in the helix, on both strands together, are A?

To the experiment

Practice · Reach the target

A helix of 2020⁠ pairs is sturdier the more hydrogen bonds it has. Change G–C pairs until the helix is held by exactly 5656⁠ hydrogen bonds, then press Check.

To the experiment

Practice · Predict, then look

Before a cell divides it copies its DNA. When the copying in the Scene is done there will be two helices. What will each of them hold?